Microbiology
Biology 20
Spring 2008 Syllabus
Professor: E. Ray Latham
Email: latham.r@mccd.edu
(I do not open emails w/o subjects!)
Phone: 209-386-6728
Office/Office Hours: B-133/TBA
Required Texts and Materials:
Microbiology: With Diseases By Body System, Robert W. Bauman,
1st Edition
4 Scantrons, pencil, pen, sharpie pen, notebook for lecture, colored
pencils, notebook for lab.
Prerequisites:
Biol-01 or Biol-04 or Biol-04H.
Adviseries:
Chem-02A; Engl-A, Engl-41
Expected Student Outcomes
(ESO): Upon completion of the course,
the student is expected to be able to:
1.
Perform
lab skills including: aseptic techniques, microscopy, bacterial staining and
culturing.
2.
Compare
and contrast the basic structure of the prokaryotic and eukaryotic cell.
3.
List and
describe growth/environmental factors influencing microbial growth.
4.
Diagram
basic metabolic pathways found in microorganisms.
5.
Evaluate
basic bacterial genetic principles and analyze implications for antibiotic
resistance, genetic recombination, and biotechnology.
6.
Articulate and compare examples of opportunistic and parasitic relationships
between humans and bacteria, viruses, fungi, protists, and helminthes.
7.
Evaluate
the role of the immune system in defending against infectious diseases.
|
|
Points Each |
# |
Total Points |
|
Lecture Exams |
100 |
3 |
300 |
|
Quizzes – which will be given during Lab
but concern lecture material |
10 |
6 |
60 |
|
Article Reviews – See Next Page |
10 |
4 |
40 |
|
Lab Book comprised of multiple Data
Sheets |
250 |
1 |
250 |
|
Lab Practicums |
100 |
3 |
300 |
|
Final Exam – Comprehensive and new
material you must take to pass class |
150 |
1 |
150 |
|
|
Total Points |
|
1100 |
Note: points are tentative; I will make
adjustments if circumstances require it.
Article Reviews
No
more than once a week, an article review may be turned in for 10 points.
A total of 4 are required.
The details for this assignment will be found on my webpage, and the
instructions/guidelines must be followed exactly or 0 credit will be received.
The last day for any Article Review is the final day of the week before
the last week (Friday of week 16 no later than 12pm).
Extra
Credit
Up to 3 additional Article Reviews may be
completed for a total of 30 extra credit points.
An opportunity for extra credit is also available in the beer label
contest. Finally, there are
extra credit opportunities available on each quiz.
Grading
Policy: Your grade will be based on the percentage of possible points that you
have earned in class.
A
90 – 100%
>989
B
80 – 89.9%
880-989
C
70 – 79.9% 770-879
D
60 – 69.9%
660-769
F
< 59.9% <660
Attendance
Policy: I will consider dropping any student who has 4 unexcused absences (two
weeks worth of class). Arriving at
class late or leaving early will be marked as being absent for half the class.
It
is ultimately your responsibility to complete the appropriate paper work
in a timely manner if you wish to drop this course.
If your name is on my final grade sheet, I will enter a grade based on
the points you have earned.
Make-up work:
There are absolutely no make-up quizzes, lab
practicums, final exams or lab work. You
may turn in data sheets for up to a total of four excused missed labs
at 60% credit. They must be
complete, turned in within a week of the absence, and accompanied with a
typed paper explaining the valid excuse for your absence.
Any other data sheets for labs missed will receive zero credit.
You may make-up one regular lecture exam under extenuating circumstances.
You must contact me by email or phone within 24 hours of the day of
the scheduled exam in order to make it up.
Documentation supporting the reason for your absence may be required.
Make-up exams must be taken within a week of the scheduled day of the exam.
Any one lab exam missed because of an excused absence may be
upgraded to a maximum of 70 points by completing a written lab exam near the
end of the semester. This will
provide an opportunity to make-up an unavoidable absence (30points extra
credit available – see above).
I strive to maintain a
positive academic environment. This
is your educational experience, so please help me to make it an excellent one.
If you have a problem with any facet of this class, then take the time to
notify me and I will try to accommodate you.
I will not compromise the integrity of the curriculum by consciously
omitting portions of the subject.
Academic Honesty
Academic dishonesty is a violation of the standards of student conduct.
The college, and therefore I as its representative, has the
responsibility to ensure that grades assigned are indicative of the knowledge
and skill level of each student and academic dishonesty makes it impossible to
fulfill this responsibility.
Academic dishonesty includes, but is not limited to, cheating, plagiarism,
collusion, and misuse of college computers and software.
I cannot and will not tolerate
Academic Dishonesty. The first
act of dishonesty will result in a zero on the assignment(s) for that day, the
second will result in an F for the course and will be reported to the office of
the Vice-President of Student Personnel.
Misusing lab equipment may also warrant these penalties.
Electronic
Devices
With
the following exceptions, no electronic devices (cell phones, blackberrys, ipods
etc.) are allowed to be on during lectures or labs.
If you have a cell phone with a vibrate function, this may be on during
non-exam times only in the vibrate mode.
Any incoming calls must be taken outside of the classroom.
Absolutely minimize the disturbance as you leave the classroom.
Calculator use is strictly regulated; you must ask me before you use one
during an in-class assignment or test.
Failure to adhere to the Electronic Device police will be considered a
Classroom Disruption or a violation
of Academic Honesty and will be
handled as detailed in the appropriate section.
Classroom Disruptions
Classroom disruptions that compromise the learning environment in the class will
not be tolerated. Classroom
disruptions include, but are not limited to, conversations while I’m lecturing
or a student is trying to ask a question, entering the classroom late or leaving
early, and inappropriate contact between students.
You are in the classroom to learn, leave the socializing to outside the
classroom. Note – classroom
discussions during an exam fall under a violation of
Academic
Honesty
and will be dealt with as detailed above.
Any act of classroom disruption will warrant a verbal reprimand.
Continue disruption will result in your expulsion from the classroom for
the rest of that session and you will not be allowed to re-enter the class for
future sessions without first having a conference with me.
Further disruptions after this conference will result in expulsion from
the class and will be reported to the office of the Vice-President of Student
Personnel.
Exam Policies
In addition to policies
outlined above, which will be strictly observed during exam times, use the
facilities before going into an exam.
Once you leave the classroom, your exam is over and I will grade based on
the answer sheet you turn in (if any) before leaving the room.
Lab Exam:
I have a fairly open lab exam format.
In order to keep the format please make note of the following rules:
1.
Fold your lab
practicum answer sheet in half and keep it folded/oriented to minimize
opportunities for other students to accidentally see your answers.
2.
No more than one
person at a station.
3.
Don’t crowd a
station; when waiting for a station wait at the side, back or front of the room.
Lines at stations are strictly forbidden.
4.
Don’t stay too
long at stations; if you are having difficulty remembering the answer, then move
onto the next station and come back when fewer people are trying to go to that
station.
Study Suggestions – A few thoughts
In order to have an opportunity to pass
this class you must endeavor to do the following:
1.)
Attend all
classes.
2.)
Read the pages
before I lecture on it, read again thoroughly the parts I cover in lecture.
3.)
Take accurate
notes and review those notes as soon as possible.
4.)
Study all relevant
material 2-3 hours for every hour spent in lecture and one hour for every hour
spent in lab – that is ~10-12 hours each week.
5.)
Quiz yourself –
are you retaining the material you attempted to acquire in 1-4?
If not, you may need to do number 2 and 4 until you do retain said
material.
6.)
I also highly
recommend that you form study groups.
It has been determined that studying in groups is more effective then
working alone.
Tentative Schedule –
I will make every effort to stick to this schedule, but I
reserve the right to change it as circumstances require.
|
Wk# |
Date |
Lecture Topic |
Text Ch |
Lab Activity |
ESO |
|
1 |
1/14 |
Introduction and
Microscopy |
4 |
Lab Safety and the Microscope |
1 |
|
1/16 |
Microscopy |
4 |
Bacterial morphology and size |
1,2 |
|
|
2 |
1/21 |
Martin Luther King Day |
|||
|
1/23 |
History of Microbiology |
1 |
Microbe hunt |
1,6 |
|
|
3 |
1/28 |
Basic Chemistry - inorganic |
2 |
Simple Stain |
1,3 |
|
1/30 |
Basic Chemistry – organic and biochem |
2 |
Negative Stain |
1,3 |
|
|
4 |
2/4 |
Cells - prokaryotes |
3 |
Gram Stain |
1,2 |
|
2/6 |
Cells - eukaryotes |
3 |
Acid Fast Stain |
1,2 |
|
|
5 |
2/11 |
Microbial Nutrition and Growth |
6 |
Spore Stain |
1,3 |
|
2/13 |
Exam 1 |
|
Capsule Stain & Review |
1,3 |
|
|
6 |
2/18 |
|
|||
|
2/20 |
Metabolism |
5 |
Preparation of Media and Growth of
Bacteria Part I |
1,3,4 |
|
|
7 |
2/25 |
Metabolism |
5 |
Preparation of Media and Growth of
Bacteria Part II |
1,3,4 |
|
2/27 |
Microbial Genetics |
7 |
Serial Dilution and Standard plate
counts |
1,3,5 |
|
|
8 |
3/3 |
Microbial Genetics |
7 |
Lab Practicum I |
5 |
|
3/5 |
Recombinant DNA Technology |
8 |
Transformation |
1,5 |
|
|
9 |
3/10 |
Antiseptics |
9 |
DNA Restriction Enzymes |
1,2,5 |
|
3/12 |
Antimicrobial drugs |
10 |
Effects of UV light and handwashing |
1,3 |
|
|
10 |
3/17 |
Antimicrobial drugs |
10 |
Throat swabs and Culturing anaerobes |
1,3 |
|
3/19 |
Eukaryotes |
12 |
Antimicrobials
& Antibiotics |
1,3,6 |
|
|
11 |
3/24 |
Spring Break |
|||
|
3/26 |
|||||
|
12 |
3/31 |
Exam 2 |
|
Parasitology & Mycology |
1,6 |
|
4/2 |
Eukaryotes |
12 |
Parasitology & Mycology |
1,6 |
|
|
13 |
4/7 |
Prokaryotes |
11 |
Microbrew Discuss Label contest |
1,3,6 |
|
4/9 |
Prokaryotes |
11 |
Lab Practicum II |
6 |
|
|
14 |
4/14 |
Viruses |
13 |
Pseudomonads |
1,3,4,6 |
|
4/16 |
Viruses |
13 |
Enterics |
1,3,4,6 |
|
|
15 |
4/21 |
Epidemiology |
14 |
Gram positive cocci |
1,3,4,6 |
|
4/23 |
Innate Immunity |
15 |
Receive Unknown, gram stain, set up
slants and streak plate, order media |
1,3,4,7 |
|
|
16 |
4/28 |
Adaptive Immunity |
16 |
Evaluate growth of unknowns, set-up
tests |
1,3,4,7 |
|
4/30 |
Exam 3 |
|
Evaluate tests for unknowns &
Transfer Microbrew |
1,3,4 |
|
|
17 |
5/5 |
Adaptive Immunity |
16 |
Bacteriophages & Turn in Microbrew
labels |
1,7 |
|
5/7 |
Immunization and Immune testing |
17 |
ELISA |
||